Quick extraction and visualization of NGS Data. Allows for calculation of strand cross-correlation to identify optimal short-read tag extension. Allows for extraction of data using a variety of data transformations. Performs genome-genome correlation of BAM files to assist in comparison of biological and technical replicates.
http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts063.abstract
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ArchTEx_1.0.6.zip | 2.1 MB | 2013-01-08 06:32 | 3 |
README_1.0.6.txt | 0.2 KB | 2013-01-08 06:30 | 8 |
ArchTEx_1.0.6.jar | 2.1 MB | 2013-01-08 06:27 | 4 |
README_1.0.5.txt | 0.3 KB | 2012-05-15 00:55 | 1 |
ArchTEx_1.0.5.jar | 2.1 MB | 2012-05-15 00:50 | 2 |
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ArchTEx 1.0.6 | |||
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ArchTEx_1.0.6.zip | 2.1 MB | 2013-01-08 06:32 | 3 |
README_1.0.6.txt | 0.2 KB | 2013-01-08 06:30 | 8 |
ArchTEx_1.0.6.jar | 2.1 MB | 2013-01-08 06:27 | 4 |
ArchTEx 1.0.5 | |||
README_1.0.5.txt | 0.3 KB | 2012-05-15 00:55 | 1 |
ArchTEx_1.0.5.jar | 2.1 MB | 2012-05-15 00:50 | 2 |
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ArchTEx_1.0.5.zip | 2.0 MB | 2012-05-15 00:49 | 1 |
ArchTEx 1.0.4 | |||
ArchTEx_README_1.0.4.pdf | 1.9 MB | 2012-02-08 05:43 | 17 |
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ArchTEx_1.0.4.zip | 2.1 MB | 2012-02-08 03:29 | 2 |
ArchTEx_1.0.4.jar | 2.1 MB | 2012-02-08 03:29 | 3 |
ArchTEx 1.0.2 | |||
ArchTEx_README_1.0.2.pdf | 1.4 MB | 2012-02-08 05:42 | 17 |
ArchTEx_1.0.2.jar | 2.1 MB | 2012-02-07 05:07 | 1 |
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ArchTEx_1.0.2.zip | 1.9 MB | 2012-02-07 04:54 | 1 |
ArchTEx 1.0.3 | |||
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ArchTEx_1.0.3.zip | 2.1 MB | 2012-02-07 07:49 | 2 |
ArchTEx_1.0.3.jar | 2.1 MB | 2012-02-07 07:49 | 1 |
ArchTEx Support Files | |||
K562_H3K4me3.bam | 1,018.0 MB | 2012-01-04 04:14 | 3 |
K562_H3K4me3.bam.bai | 6.0 MB | 2012-01-04 04:08 | 5 |
Cerevisiae_ALL_TSS.Gen | 116.2 KB | 2012-01-04 04:07 | 0 |
Human_TSS.Gen | 729.0 KB | 2012-01-04 04:07 | 3 |
refGene-hg19.txt | 10.8 MB | 2012-01-04 04:07 | 84 |
illumina_human_genes.gtf | 66.8 MB | 2012-01-04 04:07 | 0 |
Cerevisiae_EX3_Mono.sorted.bam | 710.2 MB | 2012-01-04 04:06 | 3 |
Cerevisiae_EX3_Mono.sorted.bam.bai | 35.7 KB | 2012-01-04 04:01 | 3 |